Use the "Browse" menu at the top-left to explore WholeCellSimDB including the available in silico organisms and simulation batches.
Use the "Browse" menu at the top-left to explore WholeCellSimDB including the available in silico organisms and simulation batches.
Use the basic plotting tool to preview simulations. Use the Python API to construct more advanced visualizations (see examples). Note: The Python API is not publicly accessible. Researchers must install WholeCellSimDB on their own machines to use the Python API.
Click the icons at the bottom-right to export the data described on each page. Use the "Download" menu at the top-left to download the entire database.
See the developer instructions for information about how to install WholeCellSimDB on your own machine, and save simulations to your own instance of WholeCellSimDB.
See the developer instructions for information about how to install WholeCellSimDB on your own machine, and save simulations to your own instance of WholeCellSimDB.
Please contact the development team at wholecell@lists.stanford.edu.