Package wcdbcli :: Module convert_mat_to_hdf5
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Module convert_mat_to_hdf5

source code


Example: 
>> python wcdbcli/convert_mat_to_hdf5.py \
     -o "Mycoplasma genitalium" \
     -n "Wild-type set #1" \
     -d /home/projects/WholeCell/simulation/output/runSimulation/2011_10_19_02_53_45/1 \
     -i 1

Functions [hide private]
 
main() source code
 
load_options(sim_dir) source code
 
load_parameters(sim_dir) source code
 
load_states(sim_dir) source code
 
load_property(filename, h5file, state_name, prop_name, excluded_properties, expand_sparse_mat, tmp_dir, path_to_mcr) source code
 
loadmat(filename, throw_error_on_unknown_data_format=True) source code
 
_normalize(matobj, throw_error_on_unknown_data_format)
A recursive function which constructs from matobjects nested dictionaries
source code