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First name
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Affiliation
Organism
Name
Version
Simulation metadata
Name
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Date (mm/dd/yyyy)
Simulated model
Options (
more
)
geneticKnockouts
lengthSec
macromoleculeStateInitialization
seed
stepSizeSec
timeStep
verbosity
CentralMetabolismODE.AbsTol
CentralMetabolismODE.RelTol
CentralMetabolismODE.Vectorized
ChromosomeCondensation.seed
ChromosomeCondensation.stepSizeSec
ChromosomeCondensation.verbosity
ChromosomeSegregation.seed
ChromosomeSegregation.stepSizeSec
ChromosomeSegregation.verbosity
Cytokinesis.seed
Cytokinesis.stepSizeSec
Cytokinesis.verbosity
DNADamage.seed
DNADamage.stepSizeSec
DNADamage.verbosity
DNARepair.seed
DNARepair.stepSizeSec
DNARepair.verbosity
DNASupercoiling.seed
DNASupercoiling.stepSizeSec
DNASupercoiling.verbosity
FtsZPolymerization.seed
FtsZPolymerization.stepSizeSec
FtsZPolymerization.verbosity
GlobalMetabolismRFBA.fluxBoundsEqualThresh
GlobalMetabolismRFBA.lpsolver
HostInteraction.seed
HostInteraction.stepSizeSec
HostInteraction.verbosity
MacromolecularComplexation.seed
MacromolecularComplexation.stepSizeSec
MacromolecularComplexation.verbosity
Metabolism.linearProgrammingOptions
Metabolism.macromoleculeStateInitialization
Metabolism.realmax
Metabolism.seed
Metabolism.stepSizeSec
Metabolism.tolerance
Metabolism.verbosity
ProteinActivation.seed
ProteinActivation.stepSizeSec
ProteinActivation.verbosity
ProteinDecay.seed
ProteinDecay.stepSizeSec
ProteinDecay.verbosity
ProteinFolding.seed
ProteinFolding.stepSizeSec
ProteinFolding.verbosity
ProteinModification.seed
ProteinModification.stepSizeSec
ProteinModification.verbosity
ProteinProcessingI.seed
ProteinProcessingI.stepSizeSec
ProteinProcessingI.verbosity
ProteinProcessingII.seed
ProteinProcessingII.stepSizeSec
ProteinProcessingII.verbosity
ProteinTranslocation.seed
ProteinTranslocation.stepSizeSec
ProteinTranslocation.verbosity
Replication.seed
Replication.stepSizeSec
Replication.verbosity
ReplicationInitiation.seed
ReplicationInitiation.stepSizeSec
ReplicationInitiation.verbosity
RibosomeAssembly.seed
RibosomeAssembly.stepSizeSec
RibosomeAssembly.verbosity
RNADecay.seed
RNADecay.stepSizeSec
RNADecay.verbosity
RNAModification.seed
RNAModification.stepSizeSec
RNAModification.verbosity
RNAProcessing.seed
RNAProcessing.stepSizeSec
RNAProcessing.verbosity
TerminalOrganelleAssembly.seed
TerminalOrganelleAssembly.stepSizeSec
TerminalOrganelleAssembly.verbosity
Transcription.seed
Transcription.stepSizeSec
Transcription.verbosity
TranscriptionalRegulation.seed
TranscriptionalRegulation.stepSizeSec
TranscriptionalRegulation.verbosity
Translation.seed
Translation.stepSizeSec
Translation.verbosity
tRNAAminoacylation.seed
tRNAAminoacylation.stepSizeSec
tRNAAminoacylation.verbosity
Chromosome.seed
Chromosome.verbosity
FtsZRing.seed
FtsZRing.verbosity
Geometry.seed
Geometry.verbosity
Host.seed
Host.verbosity
Mass.seed
Mass.verbosity
MetabolicReaction.seed
MetabolicReaction.verbosity
Metabolite.seed
Metabolite.verbosity
Polypeptide.seed
Polypeptide.verbosity
ProteinComplex.seed
ProteinComplex.verbosity
ProteinMonomer.seed
ProteinMonomer.verbosity
Ribosome.seed
Ribosome.verbosity
Rna.seed
Rna.verbosity
RNAPolymerase.seed
RNAPolymerase.verbosity
Stimulus.seed
Stimulus.verbosity
Time.seed
Time.verbosity
Transcript.seed
Transcript.verbosity
=
>
>=
<
<=
geneticKnockouts
lengthSec
macromoleculeStateInitialization
seed
stepSizeSec
timeStep
verbosity
CentralMetabolismODE.AbsTol
CentralMetabolismODE.RelTol
CentralMetabolismODE.Vectorized
ChromosomeCondensation.seed
ChromosomeCondensation.stepSizeSec
ChromosomeCondensation.verbosity
ChromosomeSegregation.seed
ChromosomeSegregation.stepSizeSec
ChromosomeSegregation.verbosity
Cytokinesis.seed
Cytokinesis.stepSizeSec
Cytokinesis.verbosity
DNADamage.seed
DNADamage.stepSizeSec
DNADamage.verbosity
DNARepair.seed
DNARepair.stepSizeSec
DNARepair.verbosity
DNASupercoiling.seed
DNASupercoiling.stepSizeSec
DNASupercoiling.verbosity
FtsZPolymerization.seed
FtsZPolymerization.stepSizeSec
FtsZPolymerization.verbosity
GlobalMetabolismRFBA.fluxBoundsEqualThresh
GlobalMetabolismRFBA.lpsolver
HostInteraction.seed
HostInteraction.stepSizeSec
HostInteraction.verbosity
MacromolecularComplexation.seed
MacromolecularComplexation.stepSizeSec
MacromolecularComplexation.verbosity
Metabolism.linearProgrammingOptions
Metabolism.macromoleculeStateInitialization
Metabolism.realmax
Metabolism.seed
Metabolism.stepSizeSec
Metabolism.tolerance
Metabolism.verbosity
ProteinActivation.seed
ProteinActivation.stepSizeSec
ProteinActivation.verbosity
ProteinDecay.seed
ProteinDecay.stepSizeSec
ProteinDecay.verbosity
ProteinFolding.seed
ProteinFolding.stepSizeSec
ProteinFolding.verbosity
ProteinModification.seed
ProteinModification.stepSizeSec
ProteinModification.verbosity
ProteinProcessingI.seed
ProteinProcessingI.stepSizeSec
ProteinProcessingI.verbosity
ProteinProcessingII.seed
ProteinProcessingII.stepSizeSec
ProteinProcessingII.verbosity
ProteinTranslocation.seed
ProteinTranslocation.stepSizeSec
ProteinTranslocation.verbosity
Replication.seed
Replication.stepSizeSec
Replication.verbosity
ReplicationInitiation.seed
ReplicationInitiation.stepSizeSec
ReplicationInitiation.verbosity
RibosomeAssembly.seed
RibosomeAssembly.stepSizeSec
RibosomeAssembly.verbosity
RNADecay.seed
RNADecay.stepSizeSec
RNADecay.verbosity
RNAModification.seed
RNAModification.stepSizeSec
RNAModification.verbosity
RNAProcessing.seed
RNAProcessing.stepSizeSec
RNAProcessing.verbosity
TerminalOrganelleAssembly.seed
TerminalOrganelleAssembly.stepSizeSec
TerminalOrganelleAssembly.verbosity
Transcription.seed
Transcription.stepSizeSec
Transcription.verbosity
TranscriptionalRegulation.seed
TranscriptionalRegulation.stepSizeSec
TranscriptionalRegulation.verbosity
Translation.seed
Translation.stepSizeSec
Translation.verbosity
tRNAAminoacylation.seed
tRNAAminoacylation.stepSizeSec
tRNAAminoacylation.verbosity
Chromosome.seed
Chromosome.verbosity
FtsZRing.seed
FtsZRing.verbosity
Geometry.seed
Geometry.verbosity
Host.seed
Host.verbosity
Mass.seed
Mass.verbosity
MetabolicReaction.seed
MetabolicReaction.verbosity
Metabolite.seed
Metabolite.verbosity
Polypeptide.seed
Polypeptide.verbosity
ProteinComplex.seed
ProteinComplex.verbosity
ProteinMonomer.seed
ProteinMonomer.verbosity
Ribosome.seed
Ribosome.verbosity
Rna.seed
Rna.verbosity
RNAPolymerase.seed
RNAPolymerase.verbosity
Stimulus.seed
Stimulus.verbosity
Time.seed
Time.verbosity
Transcript.seed
Transcript.verbosity
=
>
>=
<
<=
geneticKnockouts
lengthSec
macromoleculeStateInitialization
seed
stepSizeSec
timeStep
verbosity
CentralMetabolismODE.AbsTol
CentralMetabolismODE.RelTol
CentralMetabolismODE.Vectorized
ChromosomeCondensation.seed
ChromosomeCondensation.stepSizeSec
ChromosomeCondensation.verbosity
ChromosomeSegregation.seed
ChromosomeSegregation.stepSizeSec
ChromosomeSegregation.verbosity
Cytokinesis.seed
Cytokinesis.stepSizeSec
Cytokinesis.verbosity
DNADamage.seed
DNADamage.stepSizeSec
DNADamage.verbosity
DNARepair.seed
DNARepair.stepSizeSec
DNARepair.verbosity
DNASupercoiling.seed
DNASupercoiling.stepSizeSec
DNASupercoiling.verbosity
FtsZPolymerization.seed
FtsZPolymerization.stepSizeSec
FtsZPolymerization.verbosity
GlobalMetabolismRFBA.fluxBoundsEqualThresh
GlobalMetabolismRFBA.lpsolver
HostInteraction.seed
HostInteraction.stepSizeSec
HostInteraction.verbosity
MacromolecularComplexation.seed
MacromolecularComplexation.stepSizeSec
MacromolecularComplexation.verbosity
Metabolism.linearProgrammingOptions
Metabolism.macromoleculeStateInitialization
Metabolism.realmax
Metabolism.seed
Metabolism.stepSizeSec
Metabolism.tolerance
Metabolism.verbosity
ProteinActivation.seed
ProteinActivation.stepSizeSec
ProteinActivation.verbosity
ProteinDecay.seed
ProteinDecay.stepSizeSec
ProteinDecay.verbosity
ProteinFolding.seed
ProteinFolding.stepSizeSec
ProteinFolding.verbosity
ProteinModification.seed
ProteinModification.stepSizeSec
ProteinModification.verbosity
ProteinProcessingI.seed
ProteinProcessingI.stepSizeSec
ProteinProcessingI.verbosity
ProteinProcessingII.seed
ProteinProcessingII.stepSizeSec
ProteinProcessingII.verbosity
ProteinTranslocation.seed
ProteinTranslocation.stepSizeSec
ProteinTranslocation.verbosity
Replication.seed
Replication.stepSizeSec
Replication.verbosity
ReplicationInitiation.seed
ReplicationInitiation.stepSizeSec
ReplicationInitiation.verbosity
RibosomeAssembly.seed
RibosomeAssembly.stepSizeSec
RibosomeAssembly.verbosity
RNADecay.seed
RNADecay.stepSizeSec
RNADecay.verbosity
RNAModification.seed
RNAModification.stepSizeSec
RNAModification.verbosity
RNAProcessing.seed
RNAProcessing.stepSizeSec
RNAProcessing.verbosity
TerminalOrganelleAssembly.seed
TerminalOrganelleAssembly.stepSizeSec
TerminalOrganelleAssembly.verbosity
Transcription.seed
Transcription.stepSizeSec
Transcription.verbosity
TranscriptionalRegulation.seed
TranscriptionalRegulation.stepSizeSec
TranscriptionalRegulation.verbosity
Translation.seed
Translation.stepSizeSec
Translation.verbosity
tRNAAminoacylation.seed
tRNAAminoacylation.stepSizeSec
tRNAAminoacylation.verbosity
Chromosome.seed
Chromosome.verbosity
FtsZRing.seed
FtsZRing.verbosity
Geometry.seed
Geometry.verbosity
Host.seed
Host.verbosity
Mass.seed
Mass.verbosity
MetabolicReaction.seed
MetabolicReaction.verbosity
Metabolite.seed
Metabolite.verbosity
Polypeptide.seed
Polypeptide.verbosity
ProteinComplex.seed
ProteinComplex.verbosity
ProteinMonomer.seed
ProteinMonomer.verbosity
Ribosome.seed
Ribosome.verbosity
Rna.seed
Rna.verbosity
RNAPolymerase.seed
RNAPolymerase.verbosity
Stimulus.seed
Stimulus.verbosity
Time.seed
Time.verbosity
Transcript.seed
Transcript.verbosity
=
>
>=
<
<=
Parameters (
more
)
CentralMetabolismODE.FBA_to_ODE_est_init_biomass_ratio
CentralMetabolismODE.InitialConcentration_Biomass
CentralMetabolismODE.InitialConcentration_G6P
CentralMetabolismODE.InitialConcentration_G6Pxt
CentralMetabolismODE.InitialConcentration_GLCxt
CentralMetabolismODE.InitialConcentration_LACZ
CentralMetabolismODE.InitialConcentration_LCTSxt
CentralMetabolismODE.InitialConcentration_PEP
CentralMetabolismODE.InitialConcentration_PTSG
CentralMetabolismODE.InitialConcentration_PYR
CentralMetabolismODE.InitialConcentration_UHPT
CentralMetabolismODE.InitialPhosphorylation_XP
CentralMetabolismODE.K
CentralMetabolismODE.K1
CentralMetabolismODE.K2
CentralMetabolismODE.K3
CentralMetabolismODE.kb
CentralMetabolismODE.kd
CentralMetabolismODE.Keiiap
CentralMetabolismODE.Kg6p
CentralMetabolismODE.Kglc
CentralMetabolismODE.kgly
CentralMetabolismODE.KI
CentralMetabolismODE.Kieiia
CentralMetabolismODE.Klac
CentralMetabolismODE.km_pts
CentralMetabolismODE.kpdh
CentralMetabolismODE.Kpts
CentralMetabolismODE.kptsup
CentralMetabolismODE.kpyk
CentralMetabolismODE.ksyn
CentralMetabolismODE.m
CentralMetabolismODE.MolecularWeight_Biomass
CentralMetabolismODE.MolecularWeight_G6P
CentralMetabolismODE.MolecularWeight_G6Pxt
CentralMetabolismODE.MolecularWeight_GLCxt
CentralMetabolismODE.MolecularWeight_LACZ
CentralMetabolismODE.MolecularWeight_LCTSxt
CentralMetabolismODE.MolecularWeight_PEP
CentralMetabolismODE.MolecularWeight_PTSG
CentralMetabolismODE.MolecularWeight_PYR
CentralMetabolismODE.MolecularWeight_UHPT
CentralMetabolismODE.MolecularWeight_XP
CentralMetabolismODE.mw1
CentralMetabolismODE.mw2
CentralMetabolismODE.mw3
CentralMetabolismODE.n
CentralMetabolismODE.x0
CentralMetabolismODE.Y
CentralMetabolismODE.Y1_sim
CentralMetabolismODE.Y2_sim
CentralMetabolismODE.Y3_sim
ChromosomeCondensation.smcSepNt
ChromosomeCondensation.smcSepProbCenter
ChromosomeSegregation.gtpCost
Cytokinesis.rateFilamentBindingMembrane
Cytokinesis.rateFilamentDissociation
Cytokinesis.rateFtsZGtpHydrolysis
DNARepair.HR_PolA_ResectionLength
DNARepair.HR_RecA_Spacing
DNARepair.HR_RecU_CleavagePosition
DNARepair.HR_RecU_CleavageSequence
DNARepair.HR_RuvAB_JunctionMigrationHop
DNARepair.NER_PcrA_StepSize
DNARepair.NER_UvrABC_IncisionMargin3
DNARepair.NER_UvrABC_IncisionMargin5
DNARepair.RM_EcoD_MethylationPosition
DNARepair.RM_EcoD_RecognitionSequence
DNARepair.RM_EcoD_RestrictionPosition
DNARepair.RM_MunI_MethylationPosition
DNARepair.RM_MunI_RecognitionSequence
DNARepair.RM_MunI_RestrictionPosition
DNASupercoiling.foldChangeIntercepts
DNASupercoiling.foldChangeLowerSigmaLimit
DNASupercoiling.foldChangeSlopes
DNASupercoiling.foldChangeUpperSigmaLimit
DNASupercoiling.gyraseActivityRate
DNASupercoiling.gyraseATPCost
DNASupercoiling.gyraseDeltaLK
DNASupercoiling.gyraseMeanDwellTime
DNASupercoiling.gyraseSigmaLimit
DNASupercoiling.gyrLogisiticConst
DNASupercoiling.topoIActivityRate
DNASupercoiling.topoIATPCost
DNASupercoiling.topoIDeltaLK
DNASupercoiling.topoILogisiticConst
DNASupercoiling.topoISigmaLimit
DNASupercoiling.topoIVActivityRate
DNASupercoiling.topoIVATPCost
DNASupercoiling.topoIVDeltaLK
DNASupercoiling.topoIVSigmaLimit
FtsZPolymerization.activationFwd
FtsZPolymerization.activationRev
FtsZPolymerization.elongationFwd
FtsZPolymerization.elongationRev
FtsZPolymerization.exchangeFwd
FtsZPolymerization.exchangeRev
FtsZPolymerization.nucleationFwd
FtsZPolymerization.nucleationRev
GlobalMetabolismRFBA.InitialConcentration_13PDG
GlobalMetabolismRFBA.InitialConcentration_2PG
GlobalMetabolismRFBA.InitialConcentration_3PG
GlobalMetabolismRFBA.InitialConcentration_AC
GlobalMetabolismRFBA.InitialConcentration_ACCOA
GlobalMetabolismRFBA.InitialConcentration_ACTP
GlobalMetabolismRFBA.InitialConcentration_ACxt
GlobalMetabolismRFBA.InitialConcentration_ADP
GlobalMetabolismRFBA.InitialConcentration_AKG
GlobalMetabolismRFBA.InitialConcentration_AMP
GlobalMetabolismRFBA.InitialConcentration_ATP
GlobalMetabolismRFBA.InitialConcentration_bDGLAC
GlobalMetabolismRFBA.InitialConcentration_bDGLC
GlobalMetabolismRFBA.InitialConcentration_Biomass
GlobalMetabolismRFBA.InitialConcentration_CIT
GlobalMetabolismRFBA.InitialConcentration_CO2
GlobalMetabolismRFBA.InitialConcentration_CO2xt
GlobalMetabolismRFBA.InitialConcentration_COA
GlobalMetabolismRFBA.InitialConcentration_D6PGC
GlobalMetabolismRFBA.InitialConcentration_D6PGL
GlobalMetabolismRFBA.InitialConcentration_E4P
GlobalMetabolismRFBA.InitialConcentration_ETH
GlobalMetabolismRFBA.InitialConcentration_ETHxt
GlobalMetabolismRFBA.InitialConcentration_F6P
GlobalMetabolismRFBA.InitialConcentration_FAD
GlobalMetabolismRFBA.InitialConcentration_FADH
GlobalMetabolismRFBA.InitialConcentration_FDP
GlobalMetabolismRFBA.InitialConcentration_FOR
GlobalMetabolismRFBA.InitialConcentration_FORxt
GlobalMetabolismRFBA.InitialConcentration_FUM
GlobalMetabolismRFBA.InitialConcentration_G1P
GlobalMetabolismRFBA.InitialConcentration_G6P
GlobalMetabolismRFBA.InitialConcentration_G6Pxt
GlobalMetabolismRFBA.InitialConcentration_GAL1P
GlobalMetabolismRFBA.InitialConcentration_GL
GlobalMetabolismRFBA.InitialConcentration_GL3P
GlobalMetabolismRFBA.InitialConcentration_GLAC
GlobalMetabolismRFBA.InitialConcentration_GLC
GlobalMetabolismRFBA.InitialConcentration_GLCxt
GlobalMetabolismRFBA.InitialConcentration_GLX
GlobalMetabolismRFBA.InitialConcentration_GLxt
GlobalMetabolismRFBA.InitialConcentration_HEXT
GlobalMetabolismRFBA.InitialConcentration_ICIT
GlobalMetabolismRFBA.InitialConcentration_LAC
GlobalMetabolismRFBA.InitialConcentration_LACxt
GlobalMetabolismRFBA.InitialConcentration_LCTS
GlobalMetabolismRFBA.InitialConcentration_LCTSxt
GlobalMetabolismRFBA.InitialConcentration_MAL
GlobalMetabolismRFBA.InitialConcentration_NAD
GlobalMetabolismRFBA.InitialConcentration_NADH
GlobalMetabolismRFBA.InitialConcentration_NADP
GlobalMetabolismRFBA.InitialConcentration_NADPH
GlobalMetabolismRFBA.InitialConcentration_O2
GlobalMetabolismRFBA.InitialConcentration_O2xt
GlobalMetabolismRFBA.InitialConcentration_OA
GlobalMetabolismRFBA.InitialConcentration_PEP
GlobalMetabolismRFBA.InitialConcentration_PI
GlobalMetabolismRFBA.InitialConcentration_PIxt
GlobalMetabolismRFBA.InitialConcentration_PPI
GlobalMetabolismRFBA.InitialConcentration_PYR
GlobalMetabolismRFBA.InitialConcentration_PYRxt
GlobalMetabolismRFBA.InitialConcentration_Q
GlobalMetabolismRFBA.InitialConcentration_QH2
GlobalMetabolismRFBA.InitialConcentration_R5P
GlobalMetabolismRFBA.InitialConcentration_RIB
GlobalMetabolismRFBA.InitialConcentration_RIBxt
GlobalMetabolismRFBA.InitialConcentration_RL5P
GlobalMetabolismRFBA.InitialConcentration_S7P
GlobalMetabolismRFBA.InitialConcentration_SUCC
GlobalMetabolismRFBA.InitialConcentration_SUCCOA
GlobalMetabolismRFBA.InitialConcentration_SUCCxt
GlobalMetabolismRFBA.InitialConcentration_T3P1
GlobalMetabolismRFBA.InitialConcentration_T3P2
GlobalMetabolismRFBA.InitialConcentration_UDPG
GlobalMetabolismRFBA.InitialConcentration_UDPGAL
GlobalMetabolismRFBA.InitialConcentration_UTP
GlobalMetabolismRFBA.InitialConcentration_X5P
Metabolism.exchangeRateUpperBound_carbon
Metabolism.exchangeRateUpperBound_noncarbon
Metabolism.growthAssociatedMaintenance
Metabolism.macromoleculeStateInitializationGrowthFactor
Metabolism.nonGrowthAssociatedMaintenance
ProteinDecay.ftsHProteaseEnergyCost
ProteinDecay.ftsHProteaseFragmentLength
ProteinDecay.ftsHProteaseSpecificRate
ProteinDecay.lonProteaseEnergyCost
ProteinDecay.lonProteaseFragmentLength
ProteinDecay.lonProteaseSpecificRate
ProteinDecay.oligoendopeptidaseFSpecificRate
ProteinDecay.proteinMisfoldingRate
ProteinProcessingI.deformylaseSpecificRate
ProteinProcessingI.methionineAminoPeptidaseSpecificRate
ProteinProcessingII.lipoproteinDiacylglycerylTransferaseSpecificRate
ProteinProcessingII.lipoproteinSignalPeptidaseSpecificRate
ProteinTranslocation.preproteinTranslocase_aaTranslocatedPerATP
ProteinTranslocation.SRP_GTPUsedPerMonomer
ProteinTranslocation.translocaseSpecificRate
Replication.dnaPolymeraseElongationRate
Replication.laggingBackupClampReloadingLength
Replication.ligaseRate
Replication.okazakiFragmentMeanLength
Replication.primerLength
Replication.rnaPolymeraseCollisionMeanDwellTime
Replication.ssbComplexSpacing
Replication.ssbDissociationRate
Replication.startingOkazakiLoopLength
ReplicationInitiation.kb1ADP
ReplicationInitiation.kb1ATP
ReplicationInitiation.kb2ADP
ReplicationInitiation.kb2ATP
ReplicationInitiation.kd1ADP
ReplicationInitiation.kd1ATP
ReplicationInitiation.k_inact
ReplicationInitiation.k_Regen
ReplicationInitiation.K_Regen_P4
ReplicationInitiation.siteCooperativity
ReplicationInitiation.stateCooperativity
RNADecay.peptidylTRNAHydrolaseSpecificRate
RNADecay.ribonucleaseRFragmentLength
RNAProcessing.enzymeEnergyCost_DeaD
RNAProcessing.enzymeEnergyCost_RsgA
RNAProcessing.enzymeSpecificRate_DeaD
RNAProcessing.enzymeSpecificRate_RNAseIII
RNAProcessing.enzymeSpecificRate_RNAseJ
RNAProcessing.enzymeSpecificRate_RNAseP
RNAProcessing.enzymeSpecificRate_RsgA
Transcription.rnaPolymeraseElongationRate
Translation.ribosomeElongationRate
Translation.tmRNABindingProbability
Chromosome.equilibriumSuperhelicalDensity
Chromosome.relaxedBasesPerTurn
Chromosome.supercoiledSuperhelicalDensityTolerance
FtsZRing.numFtsZSubunitsPerFilament
FtsZRing.numFtsZSubunitsPerNm
Geometry.density
Mass.cellInitialDryWeight
Mass.cellInitialMassVariation
Mass.dryWeightFractionCarbohydrate
Mass.dryWeightFractionDNA
Mass.dryWeightFractionIon
Mass.dryWeightFractionLipid
Mass.dryWeightFractionNucleotide
Mass.dryWeightFractionPolyamine
Mass.dryWeightFractionProtein
Mass.dryWeightFractionRNA
Mass.dryWeightFractionVitamin
Mass.fractionWetWeight
Mass.initialBiomassConcentration
Mass.initialFractionAAsInMonomers
Mass.initialFractionNTPsInRNAs
Mass.timeAveragedCellWeight
MetabolicReaction.initialGrowthFilterWidth
MetabolicReaction.meanInitialGrowthRate
Metabolite.meanNDPConcentration
Metabolite.meanNMPConcentration
Metabolite.meanNTPConcentration
ProteinComplex.minimumAverageExpression
ProteinMonomer.macromoleculeStateInitializationVariation
ProteinMonomer.minimumAverageExpression
Rna.geneExpressionRobustness
Rna.minTRnaCnt
Rna.weightFractionMRNA
Rna.weightFractionRRNA16S
Rna.weightFractionRRNA23S
Rna.weightFractionRRNA5S
Rna.weightFractionSRNA
Rna.weightFractionTRNA
RNAPolymerase.stateExpectations
Time.cellCycleLength
Time.cytokinesisDuration
Time.replicationDuration
Time.replicationInitiationDuration
=
>
>=
<
<=
CentralMetabolismODE.FBA_to_ODE_est_init_biomass_ratio
CentralMetabolismODE.InitialConcentration_Biomass
CentralMetabolismODE.InitialConcentration_G6P
CentralMetabolismODE.InitialConcentration_G6Pxt
CentralMetabolismODE.InitialConcentration_GLCxt
CentralMetabolismODE.InitialConcentration_LACZ
CentralMetabolismODE.InitialConcentration_LCTSxt
CentralMetabolismODE.InitialConcentration_PEP
CentralMetabolismODE.InitialConcentration_PTSG
CentralMetabolismODE.InitialConcentration_PYR
CentralMetabolismODE.InitialConcentration_UHPT
CentralMetabolismODE.InitialPhosphorylation_XP
CentralMetabolismODE.K
CentralMetabolismODE.K1
CentralMetabolismODE.K2
CentralMetabolismODE.K3
CentralMetabolismODE.kb
CentralMetabolismODE.kd
CentralMetabolismODE.Keiiap
CentralMetabolismODE.Kg6p
CentralMetabolismODE.Kglc
CentralMetabolismODE.kgly
CentralMetabolismODE.KI
CentralMetabolismODE.Kieiia
CentralMetabolismODE.Klac
CentralMetabolismODE.km_pts
CentralMetabolismODE.kpdh
CentralMetabolismODE.Kpts
CentralMetabolismODE.kptsup
CentralMetabolismODE.kpyk
CentralMetabolismODE.ksyn
CentralMetabolismODE.m
CentralMetabolismODE.MolecularWeight_Biomass
CentralMetabolismODE.MolecularWeight_G6P
CentralMetabolismODE.MolecularWeight_G6Pxt
CentralMetabolismODE.MolecularWeight_GLCxt
CentralMetabolismODE.MolecularWeight_LACZ
CentralMetabolismODE.MolecularWeight_LCTSxt
CentralMetabolismODE.MolecularWeight_PEP
CentralMetabolismODE.MolecularWeight_PTSG
CentralMetabolismODE.MolecularWeight_PYR
CentralMetabolismODE.MolecularWeight_UHPT
CentralMetabolismODE.MolecularWeight_XP
CentralMetabolismODE.mw1
CentralMetabolismODE.mw2
CentralMetabolismODE.mw3
CentralMetabolismODE.n
CentralMetabolismODE.x0
CentralMetabolismODE.Y
CentralMetabolismODE.Y1_sim
CentralMetabolismODE.Y2_sim
CentralMetabolismODE.Y3_sim
ChromosomeCondensation.smcSepNt
ChromosomeCondensation.smcSepProbCenter
ChromosomeSegregation.gtpCost
Cytokinesis.rateFilamentBindingMembrane
Cytokinesis.rateFilamentDissociation
Cytokinesis.rateFtsZGtpHydrolysis
DNARepair.HR_PolA_ResectionLength
DNARepair.HR_RecA_Spacing
DNARepair.HR_RecU_CleavagePosition
DNARepair.HR_RecU_CleavageSequence
DNARepair.HR_RuvAB_JunctionMigrationHop
DNARepair.NER_PcrA_StepSize
DNARepair.NER_UvrABC_IncisionMargin3
DNARepair.NER_UvrABC_IncisionMargin5
DNARepair.RM_EcoD_MethylationPosition
DNARepair.RM_EcoD_RecognitionSequence
DNARepair.RM_EcoD_RestrictionPosition
DNARepair.RM_MunI_MethylationPosition
DNARepair.RM_MunI_RecognitionSequence
DNARepair.RM_MunI_RestrictionPosition
DNASupercoiling.foldChangeIntercepts
DNASupercoiling.foldChangeLowerSigmaLimit
DNASupercoiling.foldChangeSlopes
DNASupercoiling.foldChangeUpperSigmaLimit
DNASupercoiling.gyraseActivityRate
DNASupercoiling.gyraseATPCost
DNASupercoiling.gyraseDeltaLK
DNASupercoiling.gyraseMeanDwellTime
DNASupercoiling.gyraseSigmaLimit
DNASupercoiling.gyrLogisiticConst
DNASupercoiling.topoIActivityRate
DNASupercoiling.topoIATPCost
DNASupercoiling.topoIDeltaLK
DNASupercoiling.topoILogisiticConst
DNASupercoiling.topoISigmaLimit
DNASupercoiling.topoIVActivityRate
DNASupercoiling.topoIVATPCost
DNASupercoiling.topoIVDeltaLK
DNASupercoiling.topoIVSigmaLimit
FtsZPolymerization.activationFwd
FtsZPolymerization.activationRev
FtsZPolymerization.elongationFwd
FtsZPolymerization.elongationRev
FtsZPolymerization.exchangeFwd
FtsZPolymerization.exchangeRev
FtsZPolymerization.nucleationFwd
FtsZPolymerization.nucleationRev
GlobalMetabolismRFBA.InitialConcentration_13PDG
GlobalMetabolismRFBA.InitialConcentration_2PG
GlobalMetabolismRFBA.InitialConcentration_3PG
GlobalMetabolismRFBA.InitialConcentration_AC
GlobalMetabolismRFBA.InitialConcentration_ACCOA
GlobalMetabolismRFBA.InitialConcentration_ACTP
GlobalMetabolismRFBA.InitialConcentration_ACxt
GlobalMetabolismRFBA.InitialConcentration_ADP
GlobalMetabolismRFBA.InitialConcentration_AKG
GlobalMetabolismRFBA.InitialConcentration_AMP
GlobalMetabolismRFBA.InitialConcentration_ATP
GlobalMetabolismRFBA.InitialConcentration_bDGLAC
GlobalMetabolismRFBA.InitialConcentration_bDGLC
GlobalMetabolismRFBA.InitialConcentration_Biomass
GlobalMetabolismRFBA.InitialConcentration_CIT
GlobalMetabolismRFBA.InitialConcentration_CO2
GlobalMetabolismRFBA.InitialConcentration_CO2xt
GlobalMetabolismRFBA.InitialConcentration_COA
GlobalMetabolismRFBA.InitialConcentration_D6PGC
GlobalMetabolismRFBA.InitialConcentration_D6PGL
GlobalMetabolismRFBA.InitialConcentration_E4P
GlobalMetabolismRFBA.InitialConcentration_ETH
GlobalMetabolismRFBA.InitialConcentration_ETHxt
GlobalMetabolismRFBA.InitialConcentration_F6P
GlobalMetabolismRFBA.InitialConcentration_FAD
GlobalMetabolismRFBA.InitialConcentration_FADH
GlobalMetabolismRFBA.InitialConcentration_FDP
GlobalMetabolismRFBA.InitialConcentration_FOR
GlobalMetabolismRFBA.InitialConcentration_FORxt
GlobalMetabolismRFBA.InitialConcentration_FUM
GlobalMetabolismRFBA.InitialConcentration_G1P
GlobalMetabolismRFBA.InitialConcentration_G6P
GlobalMetabolismRFBA.InitialConcentration_G6Pxt
GlobalMetabolismRFBA.InitialConcentration_GAL1P
GlobalMetabolismRFBA.InitialConcentration_GL
GlobalMetabolismRFBA.InitialConcentration_GL3P
GlobalMetabolismRFBA.InitialConcentration_GLAC
GlobalMetabolismRFBA.InitialConcentration_GLC
GlobalMetabolismRFBA.InitialConcentration_GLCxt
GlobalMetabolismRFBA.InitialConcentration_GLX
GlobalMetabolismRFBA.InitialConcentration_GLxt
GlobalMetabolismRFBA.InitialConcentration_HEXT
GlobalMetabolismRFBA.InitialConcentration_ICIT
GlobalMetabolismRFBA.InitialConcentration_LAC
GlobalMetabolismRFBA.InitialConcentration_LACxt
GlobalMetabolismRFBA.InitialConcentration_LCTS
GlobalMetabolismRFBA.InitialConcentration_LCTSxt
GlobalMetabolismRFBA.InitialConcentration_MAL
GlobalMetabolismRFBA.InitialConcentration_NAD
GlobalMetabolismRFBA.InitialConcentration_NADH
GlobalMetabolismRFBA.InitialConcentration_NADP
GlobalMetabolismRFBA.InitialConcentration_NADPH
GlobalMetabolismRFBA.InitialConcentration_O2
GlobalMetabolismRFBA.InitialConcentration_O2xt
GlobalMetabolismRFBA.InitialConcentration_OA
GlobalMetabolismRFBA.InitialConcentration_PEP
GlobalMetabolismRFBA.InitialConcentration_PI
GlobalMetabolismRFBA.InitialConcentration_PIxt
GlobalMetabolismRFBA.InitialConcentration_PPI
GlobalMetabolismRFBA.InitialConcentration_PYR
GlobalMetabolismRFBA.InitialConcentration_PYRxt
GlobalMetabolismRFBA.InitialConcentration_Q
GlobalMetabolismRFBA.InitialConcentration_QH2
GlobalMetabolismRFBA.InitialConcentration_R5P
GlobalMetabolismRFBA.InitialConcentration_RIB
GlobalMetabolismRFBA.InitialConcentration_RIBxt
GlobalMetabolismRFBA.InitialConcentration_RL5P
GlobalMetabolismRFBA.InitialConcentration_S7P
GlobalMetabolismRFBA.InitialConcentration_SUCC
GlobalMetabolismRFBA.InitialConcentration_SUCCOA
GlobalMetabolismRFBA.InitialConcentration_SUCCxt
GlobalMetabolismRFBA.InitialConcentration_T3P1
GlobalMetabolismRFBA.InitialConcentration_T3P2
GlobalMetabolismRFBA.InitialConcentration_UDPG
GlobalMetabolismRFBA.InitialConcentration_UDPGAL
GlobalMetabolismRFBA.InitialConcentration_UTP
GlobalMetabolismRFBA.InitialConcentration_X5P
Metabolism.exchangeRateUpperBound_carbon
Metabolism.exchangeRateUpperBound_noncarbon
Metabolism.growthAssociatedMaintenance
Metabolism.macromoleculeStateInitializationGrowthFactor
Metabolism.nonGrowthAssociatedMaintenance
ProteinDecay.ftsHProteaseEnergyCost
ProteinDecay.ftsHProteaseFragmentLength
ProteinDecay.ftsHProteaseSpecificRate
ProteinDecay.lonProteaseEnergyCost
ProteinDecay.lonProteaseFragmentLength
ProteinDecay.lonProteaseSpecificRate
ProteinDecay.oligoendopeptidaseFSpecificRate
ProteinDecay.proteinMisfoldingRate
ProteinProcessingI.deformylaseSpecificRate
ProteinProcessingI.methionineAminoPeptidaseSpecificRate
ProteinProcessingII.lipoproteinDiacylglycerylTransferaseSpecificRate
ProteinProcessingII.lipoproteinSignalPeptidaseSpecificRate
ProteinTranslocation.preproteinTranslocase_aaTranslocatedPerATP
ProteinTranslocation.SRP_GTPUsedPerMonomer
ProteinTranslocation.translocaseSpecificRate
Replication.dnaPolymeraseElongationRate
Replication.laggingBackupClampReloadingLength
Replication.ligaseRate
Replication.okazakiFragmentMeanLength
Replication.primerLength
Replication.rnaPolymeraseCollisionMeanDwellTime
Replication.ssbComplexSpacing
Replication.ssbDissociationRate
Replication.startingOkazakiLoopLength
ReplicationInitiation.kb1ADP
ReplicationInitiation.kb1ATP
ReplicationInitiation.kb2ADP
ReplicationInitiation.kb2ATP
ReplicationInitiation.kd1ADP
ReplicationInitiation.kd1ATP
ReplicationInitiation.k_inact
ReplicationInitiation.k_Regen
ReplicationInitiation.K_Regen_P4
ReplicationInitiation.siteCooperativity
ReplicationInitiation.stateCooperativity
RNADecay.peptidylTRNAHydrolaseSpecificRate
RNADecay.ribonucleaseRFragmentLength
RNAProcessing.enzymeEnergyCost_DeaD
RNAProcessing.enzymeEnergyCost_RsgA
RNAProcessing.enzymeSpecificRate_DeaD
RNAProcessing.enzymeSpecificRate_RNAseIII
RNAProcessing.enzymeSpecificRate_RNAseJ
RNAProcessing.enzymeSpecificRate_RNAseP
RNAProcessing.enzymeSpecificRate_RsgA
Transcription.rnaPolymeraseElongationRate
Translation.ribosomeElongationRate
Translation.tmRNABindingProbability
Chromosome.equilibriumSuperhelicalDensity
Chromosome.relaxedBasesPerTurn
Chromosome.supercoiledSuperhelicalDensityTolerance
FtsZRing.numFtsZSubunitsPerFilament
FtsZRing.numFtsZSubunitsPerNm
Geometry.density
Mass.cellInitialDryWeight
Mass.cellInitialMassVariation
Mass.dryWeightFractionCarbohydrate
Mass.dryWeightFractionDNA
Mass.dryWeightFractionIon
Mass.dryWeightFractionLipid
Mass.dryWeightFractionNucleotide
Mass.dryWeightFractionPolyamine
Mass.dryWeightFractionProtein
Mass.dryWeightFractionRNA
Mass.dryWeightFractionVitamin
Mass.fractionWetWeight
Mass.initialBiomassConcentration
Mass.initialFractionAAsInMonomers
Mass.initialFractionNTPsInRNAs
Mass.timeAveragedCellWeight
MetabolicReaction.initialGrowthFilterWidth
MetabolicReaction.meanInitialGrowthRate
Metabolite.meanNDPConcentration
Metabolite.meanNMPConcentration
Metabolite.meanNTPConcentration
ProteinComplex.minimumAverageExpression
ProteinMonomer.macromoleculeStateInitializationVariation
ProteinMonomer.minimumAverageExpression
Rna.geneExpressionRobustness
Rna.minTRnaCnt
Rna.weightFractionMRNA
Rna.weightFractionRRNA16S
Rna.weightFractionRRNA23S
Rna.weightFractionRRNA5S
Rna.weightFractionSRNA
Rna.weightFractionTRNA
RNAPolymerase.stateExpectations
Time.cellCycleLength
Time.cytokinesisDuration
Time.replicationDuration
Time.replicationInitiationDuration
=
>
>=
<
<=
CentralMetabolismODE.FBA_to_ODE_est_init_biomass_ratio
CentralMetabolismODE.InitialConcentration_Biomass
CentralMetabolismODE.InitialConcentration_G6P
CentralMetabolismODE.InitialConcentration_G6Pxt
CentralMetabolismODE.InitialConcentration_GLCxt
CentralMetabolismODE.InitialConcentration_LACZ
CentralMetabolismODE.InitialConcentration_LCTSxt
CentralMetabolismODE.InitialConcentration_PEP
CentralMetabolismODE.InitialConcentration_PTSG
CentralMetabolismODE.InitialConcentration_PYR
CentralMetabolismODE.InitialConcentration_UHPT
CentralMetabolismODE.InitialPhosphorylation_XP
CentralMetabolismODE.K
CentralMetabolismODE.K1
CentralMetabolismODE.K2
CentralMetabolismODE.K3
CentralMetabolismODE.kb
CentralMetabolismODE.kd
CentralMetabolismODE.Keiiap
CentralMetabolismODE.Kg6p
CentralMetabolismODE.Kglc
CentralMetabolismODE.kgly
CentralMetabolismODE.KI
CentralMetabolismODE.Kieiia
CentralMetabolismODE.Klac
CentralMetabolismODE.km_pts
CentralMetabolismODE.kpdh
CentralMetabolismODE.Kpts
CentralMetabolismODE.kptsup
CentralMetabolismODE.kpyk
CentralMetabolismODE.ksyn
CentralMetabolismODE.m
CentralMetabolismODE.MolecularWeight_Biomass
CentralMetabolismODE.MolecularWeight_G6P
CentralMetabolismODE.MolecularWeight_G6Pxt
CentralMetabolismODE.MolecularWeight_GLCxt
CentralMetabolismODE.MolecularWeight_LACZ
CentralMetabolismODE.MolecularWeight_LCTSxt
CentralMetabolismODE.MolecularWeight_PEP
CentralMetabolismODE.MolecularWeight_PTSG
CentralMetabolismODE.MolecularWeight_PYR
CentralMetabolismODE.MolecularWeight_UHPT
CentralMetabolismODE.MolecularWeight_XP
CentralMetabolismODE.mw1
CentralMetabolismODE.mw2
CentralMetabolismODE.mw3
CentralMetabolismODE.n
CentralMetabolismODE.x0
CentralMetabolismODE.Y
CentralMetabolismODE.Y1_sim
CentralMetabolismODE.Y2_sim
CentralMetabolismODE.Y3_sim
ChromosomeCondensation.smcSepNt
ChromosomeCondensation.smcSepProbCenter
ChromosomeSegregation.gtpCost
Cytokinesis.rateFilamentBindingMembrane
Cytokinesis.rateFilamentDissociation
Cytokinesis.rateFtsZGtpHydrolysis
DNARepair.HR_PolA_ResectionLength
DNARepair.HR_RecA_Spacing
DNARepair.HR_RecU_CleavagePosition
DNARepair.HR_RecU_CleavageSequence
DNARepair.HR_RuvAB_JunctionMigrationHop
DNARepair.NER_PcrA_StepSize
DNARepair.NER_UvrABC_IncisionMargin3
DNARepair.NER_UvrABC_IncisionMargin5
DNARepair.RM_EcoD_MethylationPosition
DNARepair.RM_EcoD_RecognitionSequence
DNARepair.RM_EcoD_RestrictionPosition
DNARepair.RM_MunI_MethylationPosition
DNARepair.RM_MunI_RecognitionSequence
DNARepair.RM_MunI_RestrictionPosition
DNASupercoiling.foldChangeIntercepts
DNASupercoiling.foldChangeLowerSigmaLimit
DNASupercoiling.foldChangeSlopes
DNASupercoiling.foldChangeUpperSigmaLimit
DNASupercoiling.gyraseActivityRate
DNASupercoiling.gyraseATPCost
DNASupercoiling.gyraseDeltaLK
DNASupercoiling.gyraseMeanDwellTime
DNASupercoiling.gyraseSigmaLimit
DNASupercoiling.gyrLogisiticConst
DNASupercoiling.topoIActivityRate
DNASupercoiling.topoIATPCost
DNASupercoiling.topoIDeltaLK
DNASupercoiling.topoILogisiticConst
DNASupercoiling.topoISigmaLimit
DNASupercoiling.topoIVActivityRate
DNASupercoiling.topoIVATPCost
DNASupercoiling.topoIVDeltaLK
DNASupercoiling.topoIVSigmaLimit
FtsZPolymerization.activationFwd
FtsZPolymerization.activationRev
FtsZPolymerization.elongationFwd
FtsZPolymerization.elongationRev
FtsZPolymerization.exchangeFwd
FtsZPolymerization.exchangeRev
FtsZPolymerization.nucleationFwd
FtsZPolymerization.nucleationRev
GlobalMetabolismRFBA.InitialConcentration_13PDG
GlobalMetabolismRFBA.InitialConcentration_2PG
GlobalMetabolismRFBA.InitialConcentration_3PG
GlobalMetabolismRFBA.InitialConcentration_AC
GlobalMetabolismRFBA.InitialConcentration_ACCOA
GlobalMetabolismRFBA.InitialConcentration_ACTP
GlobalMetabolismRFBA.InitialConcentration_ACxt
GlobalMetabolismRFBA.InitialConcentration_ADP
GlobalMetabolismRFBA.InitialConcentration_AKG
GlobalMetabolismRFBA.InitialConcentration_AMP
GlobalMetabolismRFBA.InitialConcentration_ATP
GlobalMetabolismRFBA.InitialConcentration_bDGLAC
GlobalMetabolismRFBA.InitialConcentration_bDGLC
GlobalMetabolismRFBA.InitialConcentration_Biomass
GlobalMetabolismRFBA.InitialConcentration_CIT
GlobalMetabolismRFBA.InitialConcentration_CO2
GlobalMetabolismRFBA.InitialConcentration_CO2xt
GlobalMetabolismRFBA.InitialConcentration_COA
GlobalMetabolismRFBA.InitialConcentration_D6PGC
GlobalMetabolismRFBA.InitialConcentration_D6PGL
GlobalMetabolismRFBA.InitialConcentration_E4P
GlobalMetabolismRFBA.InitialConcentration_ETH
GlobalMetabolismRFBA.InitialConcentration_ETHxt
GlobalMetabolismRFBA.InitialConcentration_F6P
GlobalMetabolismRFBA.InitialConcentration_FAD
GlobalMetabolismRFBA.InitialConcentration_FADH
GlobalMetabolismRFBA.InitialConcentration_FDP
GlobalMetabolismRFBA.InitialConcentration_FOR
GlobalMetabolismRFBA.InitialConcentration_FORxt
GlobalMetabolismRFBA.InitialConcentration_FUM
GlobalMetabolismRFBA.InitialConcentration_G1P
GlobalMetabolismRFBA.InitialConcentration_G6P
GlobalMetabolismRFBA.InitialConcentration_G6Pxt
GlobalMetabolismRFBA.InitialConcentration_GAL1P
GlobalMetabolismRFBA.InitialConcentration_GL
GlobalMetabolismRFBA.InitialConcentration_GL3P
GlobalMetabolismRFBA.InitialConcentration_GLAC
GlobalMetabolismRFBA.InitialConcentration_GLC
GlobalMetabolismRFBA.InitialConcentration_GLCxt
GlobalMetabolismRFBA.InitialConcentration_GLX
GlobalMetabolismRFBA.InitialConcentration_GLxt
GlobalMetabolismRFBA.InitialConcentration_HEXT
GlobalMetabolismRFBA.InitialConcentration_ICIT
GlobalMetabolismRFBA.InitialConcentration_LAC
GlobalMetabolismRFBA.InitialConcentration_LACxt
GlobalMetabolismRFBA.InitialConcentration_LCTS
GlobalMetabolismRFBA.InitialConcentration_LCTSxt
GlobalMetabolismRFBA.InitialConcentration_MAL
GlobalMetabolismRFBA.InitialConcentration_NAD
GlobalMetabolismRFBA.InitialConcentration_NADH
GlobalMetabolismRFBA.InitialConcentration_NADP
GlobalMetabolismRFBA.InitialConcentration_NADPH
GlobalMetabolismRFBA.InitialConcentration_O2
GlobalMetabolismRFBA.InitialConcentration_O2xt
GlobalMetabolismRFBA.InitialConcentration_OA
GlobalMetabolismRFBA.InitialConcentration_PEP
GlobalMetabolismRFBA.InitialConcentration_PI
GlobalMetabolismRFBA.InitialConcentration_PIxt
GlobalMetabolismRFBA.InitialConcentration_PPI
GlobalMetabolismRFBA.InitialConcentration_PYR
GlobalMetabolismRFBA.InitialConcentration_PYRxt
GlobalMetabolismRFBA.InitialConcentration_Q
GlobalMetabolismRFBA.InitialConcentration_QH2
GlobalMetabolismRFBA.InitialConcentration_R5P
GlobalMetabolismRFBA.InitialConcentration_RIB
GlobalMetabolismRFBA.InitialConcentration_RIBxt
GlobalMetabolismRFBA.InitialConcentration_RL5P
GlobalMetabolismRFBA.InitialConcentration_S7P
GlobalMetabolismRFBA.InitialConcentration_SUCC
GlobalMetabolismRFBA.InitialConcentration_SUCCOA
GlobalMetabolismRFBA.InitialConcentration_SUCCxt
GlobalMetabolismRFBA.InitialConcentration_T3P1
GlobalMetabolismRFBA.InitialConcentration_T3P2
GlobalMetabolismRFBA.InitialConcentration_UDPG
GlobalMetabolismRFBA.InitialConcentration_UDPGAL
GlobalMetabolismRFBA.InitialConcentration_UTP
GlobalMetabolismRFBA.InitialConcentration_X5P
Metabolism.exchangeRateUpperBound_carbon
Metabolism.exchangeRateUpperBound_noncarbon
Metabolism.growthAssociatedMaintenance
Metabolism.macromoleculeStateInitializationGrowthFactor
Metabolism.nonGrowthAssociatedMaintenance
ProteinDecay.ftsHProteaseEnergyCost
ProteinDecay.ftsHProteaseFragmentLength
ProteinDecay.ftsHProteaseSpecificRate
ProteinDecay.lonProteaseEnergyCost
ProteinDecay.lonProteaseFragmentLength
ProteinDecay.lonProteaseSpecificRate
ProteinDecay.oligoendopeptidaseFSpecificRate
ProteinDecay.proteinMisfoldingRate
ProteinProcessingI.deformylaseSpecificRate
ProteinProcessingI.methionineAminoPeptidaseSpecificRate
ProteinProcessingII.lipoproteinDiacylglycerylTransferaseSpecificRate
ProteinProcessingII.lipoproteinSignalPeptidaseSpecificRate
ProteinTranslocation.preproteinTranslocase_aaTranslocatedPerATP
ProteinTranslocation.SRP_GTPUsedPerMonomer
ProteinTranslocation.translocaseSpecificRate
Replication.dnaPolymeraseElongationRate
Replication.laggingBackupClampReloadingLength
Replication.ligaseRate
Replication.okazakiFragmentMeanLength
Replication.primerLength
Replication.rnaPolymeraseCollisionMeanDwellTime
Replication.ssbComplexSpacing
Replication.ssbDissociationRate
Replication.startingOkazakiLoopLength
ReplicationInitiation.kb1ADP
ReplicationInitiation.kb1ATP
ReplicationInitiation.kb2ADP
ReplicationInitiation.kb2ATP
ReplicationInitiation.kd1ADP
ReplicationInitiation.kd1ATP
ReplicationInitiation.k_inact
ReplicationInitiation.k_Regen
ReplicationInitiation.K_Regen_P4
ReplicationInitiation.siteCooperativity
ReplicationInitiation.stateCooperativity
RNADecay.peptidylTRNAHydrolaseSpecificRate
RNADecay.ribonucleaseRFragmentLength
RNAProcessing.enzymeEnergyCost_DeaD
RNAProcessing.enzymeEnergyCost_RsgA
RNAProcessing.enzymeSpecificRate_DeaD
RNAProcessing.enzymeSpecificRate_RNAseIII
RNAProcessing.enzymeSpecificRate_RNAseJ
RNAProcessing.enzymeSpecificRate_RNAseP
RNAProcessing.enzymeSpecificRate_RsgA
Transcription.rnaPolymeraseElongationRate
Translation.ribosomeElongationRate
Translation.tmRNABindingProbability
Chromosome.equilibriumSuperhelicalDensity
Chromosome.relaxedBasesPerTurn
Chromosome.supercoiledSuperhelicalDensityTolerance
FtsZRing.numFtsZSubunitsPerFilament
FtsZRing.numFtsZSubunitsPerNm
Geometry.density
Mass.cellInitialDryWeight
Mass.cellInitialMassVariation
Mass.dryWeightFractionCarbohydrate
Mass.dryWeightFractionDNA
Mass.dryWeightFractionIon
Mass.dryWeightFractionLipid
Mass.dryWeightFractionNucleotide
Mass.dryWeightFractionPolyamine
Mass.dryWeightFractionProtein
Mass.dryWeightFractionRNA
Mass.dryWeightFractionVitamin
Mass.fractionWetWeight
Mass.initialBiomassConcentration
Mass.initialFractionAAsInMonomers
Mass.initialFractionNTPsInRNAs
Mass.timeAveragedCellWeight
MetabolicReaction.initialGrowthFilterWidth
MetabolicReaction.meanInitialGrowthRate
Metabolite.meanNDPConcentration
Metabolite.meanNMPConcentration
Metabolite.meanNTPConcentration
ProteinComplex.minimumAverageExpression
ProteinMonomer.macromoleculeStateInitializationVariation
ProteinMonomer.minimumAverageExpression
Rna.geneExpressionRobustness
Rna.minTRnaCnt
Rna.weightFractionMRNA
Rna.weightFractionRRNA16S
Rna.weightFractionRRNA23S
Rna.weightFractionRRNA5S
Rna.weightFractionSRNA
Rna.weightFractionTRNA
RNAPolymerase.stateExpectations
Time.cellCycleLength
Time.cytokinesisDuration
Time.replicationDuration
Time.replicationInitiationDuration
=
>
>=
<
<=
Processes (
more
)
CentralMetabolismODE
ChromosomeCondensation
ChromosomeSegregation
Cytokinesis
DNADamage
DNARepair
DNASupercoiling
FtsZPolymerization
GlobalMetabolismRFBA
HostInteraction
MacromolecularComplexation
Metabolism
ProteinActivation
ProteinDecay
ProteinFolding
ProteinModification
ProteinProcessingI
ProteinProcessingII
ProteinTranslocation
Replication
ReplicationInitiation
RibosomeAssembly
RNADecay
RNAModification
RNAProcessing
TerminalOrganelleAssembly
Transcription
TranscriptionalRegulation
Translation
tRNAAminoacylation
Modeled
Not modeled
CentralMetabolismODE
ChromosomeCondensation
ChromosomeSegregation
Cytokinesis
DNADamage
DNARepair
DNASupercoiling
FtsZPolymerization
GlobalMetabolismRFBA
HostInteraction
MacromolecularComplexation
Metabolism
ProteinActivation
ProteinDecay
ProteinFolding
ProteinModification
ProteinProcessingI
ProteinProcessingII
ProteinTranslocation
Replication
ReplicationInitiation
RibosomeAssembly
RNADecay
RNAModification
RNAProcessing
TerminalOrganelleAssembly
Transcription
TranscriptionalRegulation
Translation
tRNAAminoacylation
Modeled
Not modeled
CentralMetabolismODE
ChromosomeCondensation
ChromosomeSegregation
Cytokinesis
DNADamage
DNARepair
DNASupercoiling
FtsZPolymerization
GlobalMetabolismRFBA
HostInteraction
MacromolecularComplexation
Metabolism
ProteinActivation
ProteinDecay
ProteinFolding
ProteinModification
ProteinProcessingI
ProteinProcessingII
ProteinTranslocation
Replication
ReplicationInitiation
RibosomeAssembly
RNADecay
RNAModification
RNAProcessing
TerminalOrganelleAssembly
Transcription
TranscriptionalRegulation
Translation
tRNAAminoacylation
Modeled
Not modeled
States (
more
)
abasicSites
complexBoundSites
damagedBases
damagedSugarPhosphates
doubleStrandedRegions
gapSites
geneCopyNumbers
hollidayJunctions
intrastrandCrossLinks
linkingNumbers
monomerBoundSites
ploidy
polymerizedRegions
segregated
singleStrandedRegions
strandBreaks
superhelicalDensity
transcriptionUnitCopyNumbers
numEdges
numEdgesOneStraight
numEdgesTwoBent
numEdgesTwoStraight
numResidualBent
chamberVolume
cylindricalLength
pinched
pinchedCircumference
pinchedDiameter
surfaceArea
totalLength
volume
width
isBacteriumAdherent
isInflammatoryResponseActivated
isNFkBActivated
isTLRActivated
cell
cellDry
dnaWt
media
metaboliteWt
proteinWt
rnaWt
total
waterWt
doublingTime
fluxs
growth
BiomassConcentration
counts
ExternalConcentrations
InternalConcentrations
processAllocations
processRequirements
processUsages
abortedPolypeptides
boundMRNAs
nascentMonomerLengths
proteolysisTagLengths
ActivationStatus
FractionPhosphorylated
InternalConcentrations
counts
counts
Fluxes
Growth
boundMRNAs
mRNAPositions
nActive
nNotExist
nStalled
stateOccupancies
states
tmRNAPositions
counts
nActive
nFree
nNonSpecificallyBound
nSpecificallyBound
positionStrands
stateOccupancies
states
supercoilingBindingProbFoldChange
transcriptionFactorBindingProbFoldChange
values
values
abortedTranscripts
boundTranscriptChromosome
boundTranscriptionUnits
boundTranscriptProgress
rnaBoundRNAPolymerases
Modeled
Not modeled
abasicSites
complexBoundSites
damagedBases
damagedSugarPhosphates
doubleStrandedRegions
gapSites
geneCopyNumbers
hollidayJunctions
intrastrandCrossLinks
linkingNumbers
monomerBoundSites
ploidy
polymerizedRegions
segregated
singleStrandedRegions
strandBreaks
superhelicalDensity
transcriptionUnitCopyNumbers
numEdges
numEdgesOneStraight
numEdgesTwoBent
numEdgesTwoStraight
numResidualBent
chamberVolume
cylindricalLength
pinched
pinchedCircumference
pinchedDiameter
surfaceArea
totalLength
volume
width
isBacteriumAdherent
isInflammatoryResponseActivated
isNFkBActivated
isTLRActivated
cell
cellDry
dnaWt
media
metaboliteWt
proteinWt
rnaWt
total
waterWt
doublingTime
fluxs
growth
BiomassConcentration
counts
ExternalConcentrations
InternalConcentrations
processAllocations
processRequirements
processUsages
abortedPolypeptides
boundMRNAs
nascentMonomerLengths
proteolysisTagLengths
ActivationStatus
FractionPhosphorylated
InternalConcentrations
counts
counts
Fluxes
Growth
boundMRNAs
mRNAPositions
nActive
nNotExist
nStalled
stateOccupancies
states
tmRNAPositions
counts
nActive
nFree
nNonSpecificallyBound
nSpecificallyBound
positionStrands
stateOccupancies
states
supercoilingBindingProbFoldChange
transcriptionFactorBindingProbFoldChange
values
values
abortedTranscripts
boundTranscriptChromosome
boundTranscriptionUnits
boundTranscriptProgress
rnaBoundRNAPolymerases
Modeled
Not modeled
abasicSites
complexBoundSites
damagedBases
damagedSugarPhosphates
doubleStrandedRegions
gapSites
geneCopyNumbers
hollidayJunctions
intrastrandCrossLinks
linkingNumbers
monomerBoundSites
ploidy
polymerizedRegions
segregated
singleStrandedRegions
strandBreaks
superhelicalDensity
transcriptionUnitCopyNumbers
numEdges
numEdgesOneStraight
numEdgesTwoBent
numEdgesTwoStraight
numResidualBent
chamberVolume
cylindricalLength
pinched
pinchedCircumference
pinchedDiameter
surfaceArea
totalLength
volume
width
isBacteriumAdherent
isInflammatoryResponseActivated
isNFkBActivated
isTLRActivated
cell
cellDry
dnaWt
media
metaboliteWt
proteinWt
rnaWt
total
waterWt
doublingTime
fluxs
growth
BiomassConcentration
counts
ExternalConcentrations
InternalConcentrations
processAllocations
processRequirements
processUsages
abortedPolypeptides
boundMRNAs
nascentMonomerLengths
proteolysisTagLengths
ActivationStatus
FractionPhosphorylated
InternalConcentrations
counts
counts
Fluxes
Growth
boundMRNAs
mRNAPositions
nActive
nNotExist
nStalled
stateOccupancies
states
tmRNAPositions
counts
nActive
nFree
nNonSpecificallyBound
nSpecificallyBound
positionStrands
stateOccupancies
states
supercoilingBindingProbFoldChange
transcriptionFactorBindingProbFoldChange
values
values
abortedTranscripts
boundTranscriptChromosome
boundTranscriptionUnits
boundTranscriptProgress
rnaBoundRNAPolymerases
Modeled
Not modeled