| Options | ||
|---|---|---|
| seed | ■ | |
| stepSizeSec (s) | 1 | |
| verbosity | 1 | |
| Parameters | ||
| foldChangeIntercepts (dimensionless) | [3.57, 1.07, 0.56] | |
| foldChangeLowerSigmaLimit (dimensionless) | -0.08 | |
| foldChangeSlopes (dimensionless) | [42.8, 1.1, -7.4] | |
| foldChangeUpperSigmaLimit (dimensionless) | 0.07 | |
| gyraseActivityRate (1/s) | 1.2 | |
| gyraseATPCost (molecules) | 2 | |
| gyraseDeltaLK (links) | -2 | |
| gyraseMeanDwellTime (s) | 45 | |
| gyraseSigmaLimit (dimensionless) | -0.1 | |
| gyrLogisiticConst (dimensionless) | -100 | |
| topoIActivityRate (1/s) | 1 | |
| topoIATPCost (molecules) | ||
| topoIDeltaLK (links) | 1 | |
| topoILogisiticConst (dimensionless) | 100 | |
| topoISigmaLimit (dimensionless) | ||
| topoIVActivityRate (1/s) | 2.5 | |
| topoIVATPCost (molecules) | 2 | |
| topoIVDeltaLK (links) | -2 | |
| topoIVSigmaLimit (dimensionless) | ||
