Tutorial

  • Browsing WholeCellSimDB

    Use the "Browse" menu at the top-left to explore WholeCellSimDB including the available in silico organisms and simulation batches.

  • Searching WholeCellSimDB

    Use the "Browse" menu at the top-left to explore WholeCellSimDB including the available in silico organisms and simulation batches.

  • Visualizing simulations

    Use the basic plotting tool to preview simulations. Use the Python API to construct more advanced visualizations (see examples). Note: The Python API is not publicly accessible. Researchers must install WholeCellSimDB on their own machines to use the Python API.

  • Exporting data

    Click the icons at the bottom-right to export the data described on each page. Use the "Download" menu at the top-left to download the entire database.

  • Storing simulations in WholeCellSimDB

    See the developer instructions for information about how to install WholeCellSimDB on your own machine, and save simulations to your own instance of WholeCellSimDB.

  • Installing WholeCellSimDB

    See the developer instructions for information about how to install WholeCellSimDB on your own machine, and save simulations to your own instance of WholeCellSimDB.

  • Need more help?

    Please contact the development team at wholecell@lists.stanford.edu.