Process › DNASupercoiling

Options
seed
stepSizeSec (s) 1
verbosity 1
Parameters
foldChangeIntercepts (dimensionless) [3.57, 1.07, 0.56]
foldChangeLowerSigmaLimit (dimensionless) -0.08
foldChangeSlopes (dimensionless) [42.8, 1.1, -7.4]
foldChangeUpperSigmaLimit (dimensionless) 0.07
gyraseActivityRate (1/s) 1.2
gyraseATPCost (molecules) 2
gyraseDeltaLK (links) -2
gyraseMeanDwellTime (s) 45
gyraseSigmaLimit (dimensionless) -0.1
gyrLogisiticConst (dimensionless) -100
topoIActivityRate (1/s) 1
topoIATPCost (molecules)
topoIDeltaLK (links) 1
topoILogisiticConst (dimensionless) 100
topoISigmaLimit (dimensionless)
topoIVActivityRate (1/s) 2.5
topoIVATPCost (molecules) 2
topoIVDeltaLK (links) -2
topoIVSigmaLimit (dimensionless)